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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25085096_25090906_F

Intron Information:

Intron Rank:
150272
Intron Class:
major
Intron Phase:
Intron Coordinates:
25085096 - 25090906
Intron Length:
5811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTTGTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.4
0.57
1
79.6
32.4
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
47.7
-0.1
2.3
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030228
25084275 - 25094872
10598