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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25090994_25094503_F

Intron Information:

Intron Rank:
150273
Intron Class:
major
Intron Phase:
Intron Coordinates:
25090994 - 25094503
Intron Length:
3510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
CCATCCTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
75.5
0.57
0.8
68.5
31.7
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
50.3
0
1.9
60.27
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030228
25084275 - 25094872
10598