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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2509168_2509838_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2509168 - 2509838
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
TCATTGGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
SVQPPSMDVLEKRLRDRQTE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.3
40.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.8
0.31
1.1
61.7
44.3
Minor 5ss
31.4
-2.1
3.3
37.8
42.4
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047842
2501892 - 2511223
9332
ENSAPLT00000043023
2501892 - 2511223
9332
ENSAPLT00000004355
2505303 - 2511223
5921