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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2509924_2510253_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2509924 - 2510253
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCCG
5'SS Class:
major
3'SS Sequence:
GTTCCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CCTCCTCTAACT
Flanking Amino Acid:
LSAARVDLELSKEPGLFDLV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
60
44.9
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73.4
0.53
0.8
65.9
35.9
Minor 5ss
35.8
-1.6
2.8
39.4
39.6
Minor BPS
58.2
0.34
1.7
73.75
43.2

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004355
2505303 - 2511223
5921