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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25101925_25103064_R

Intron Information:

Intron Rank:
155318
Intron Class:
major
Intron Phase:
Intron Coordinates:
25101925 - 25103064
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACATTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.1
0.61
0.8
76.4
32.2
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
54.9
0.23
1.5
66.56
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031048
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022055
25101428 - 25103773
2346