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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25121763_25123726_R

Intron Information:

Intron Rank:
132889
Intron Class:
major
Intron Phase:
Intron Coordinates:
25121763 - 25123726
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAG
5'SS Class:
major
3'SS Sequence:
ATCTCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
ATCTCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.4
40.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
78.3
0.64
0.8
72.3
31.7
Minor 5ss
33.4
-1.9
3
41.6
45
Minor BPS
70.2
0.63
1.7
77.53
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018721
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039901
25121588 - 25126053
4466