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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25163561_25164181_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25163561 - 25164181
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
CLATSQHVSEASAGRRGPRG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.5
0.8
0.8
77.6
36.5
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000024258
25161234 - 25198254
37021