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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25164200_25164869_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25164200 - 25164869
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATTAAGT
Flanking Amino Acid:
HVSEASAGRRGPRGDKGPQG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.7
0.71
0.8
78.7
28.5
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
57
0.3
1.9
72.86
43.6

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000024258
25161234 - 25198254
37021