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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25171633_25171909_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25171633 - 25171909
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTACTCAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTCTACTCAATA
Flanking Amino Acid:
PGLPGFKGIRGHNGLDGQKG
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.1
38.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
64.9
0.34
0.9
59
35.8
Minor 5ss
31.9
-2.1
2.9
32.9
41.9
Minor BPS
61.1
0.34
1.7
72.62
39.5

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321