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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25173928_25174038_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25173928 - 25174038
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTGCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTACCA
Flanking Amino Acid:
RGRVGAPGPAGARGSDGSAG
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
63.9
41
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
76.1
32.6
Minor 5ss
35.9
-1.6
3.3
53.5
43.7
Minor BPS
70.7
0.65
1.8
84.46
35.5

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021