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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25178179_25178294_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25178179 - 25178294
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTCTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CTCACAATACAT
Flanking Amino Acid:
NGLPGAKGAAGLPGVAGAPG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
70.1
0.45
1
68.1
37.5
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
39.7
-0.7
2.1
56.05
45.5

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021