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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25178968_25179068_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25178968 - 25179068
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGGTTGAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTGGTTGAAAT
Flanking Amino Acid:
KGESGNKGEPGAAGPPGPPG
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
59
0.2
1.1
55.3
43.9
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
48.8
-0
2
73.72
43.2

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021