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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25179177_25179993_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25179177 - 25179993
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TGTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CCTTTCTTGATT
Flanking Amino Acid:
AGPPGPAGLRGVPGSRGLPG
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81
0.7
0.9
74.3
35.4
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
70.2
0.72
1.2
77.73
39.7

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292