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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25180048_25180150_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25180048 - 25180150
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTGCCTAATT
Flanking Amino Acid:
PGADGRAGVMGPAGNRGASG
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
1
73.3
37.2
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
50.6
0.1
2.1
71.93
45.5

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321