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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25182403_25183093_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25182403 - 25183093
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGGA
5'SS Class:
major
3'SS Sequence:
TGAACACATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTACTTGAACA
Flanking Amino Acid:
KGNVGLAGPRGAPGPEGNNG
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65
41.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
57.3
0.16
1
52.9
41.7
Minor 5ss
37.7
-1.4
3.1
40.4
45.8
Minor BPS
65.3
0.48
1.5
72.91
39

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321