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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25183488_25184276_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25183488 - 25184276
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTATCAATC
Flanking Amino Acid:
AGEAGKPGERGLHGEFGVPG
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.3
0.68
0.7
73
31.9
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
53.3
0.08
1.8
67.17
38.8

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021