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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25184322_25185284_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25184322 - 25185284
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CTGTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAT
U12 Branch Point Sequence:
GAAACTCCAATC
Flanking Amino Acid:
FGVPGPAGPRGERGPPGESG
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
59.5
0.24
1.3
68.4
35.9
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
42.9
-0.5
1.7
47.44
35

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321