Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25185384_25186100_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25185384 - 25186100

Intron Length:

717

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CTGTTGCTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TCTGTCTTACAA

Flanking Amino Acid:

SGPPGPDGNKGEPGNVGAAG

Intron Amino Acid Position:

530

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

83.5

35.1

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

64.5

0.33

58.2

43.1

Minor 5ss

46.2

-0.4

2.8

67.2

43.9

Minor BPS

50.6

0.02

1.8

63.42

43.3

Associated Gene:

Gene:

COL1A2

Ensembl Gene ID:

ENSAPLG00000011169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030919

25161234 - 25198254

37021

ENSAPLT00000029507

25167934 - 25198225

30292

ENSAPLT00000024258

25161234 - 25198254

37021

ENSAPLT00000012212

25167934 - 25198254

30321