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Intron Name: Anas_platyrhynchos_platyrhynchos_2_25186120_25186173_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25186120 - 25186173

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGCTGCTG

5'SS Class:

weak_major

3'SS Sequence:

CCAGGAGAGAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGGAAT

U12 Branch Point Sequence:

AATCCCAGGAGA

Flanking Amino Acid:

DGNKGEPGNVGVAGVPGGKG

Intron Amino Acid Position:

536

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.1

46.1

43.3

Major BPS

46.7

-0.2

1.6

55.4

48.1

Major PPT

38.3

-0.6

1.6

26.9

35.2

Minor 5ss

28.1

-2.5

3.5

43.4

Minor BPS

42.8

-0.5

1.9

53.3

Associated Gene:

Gene:

COL1A2

Ensembl Gene ID:

ENSAPLG00000011169

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029507

25167934 - 25198225

30292