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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25186209_25187104_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25186209 - 25187104
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
ATGGTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCTCTGTGTATG
Flanking Amino Acid:
AGVPGGKGEKGAPGLRGDAG
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
74.4
0.55
0.9
66.3
44.6
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
38.5
-1
2.3
44.52
41.8

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321