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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25187773_25188292_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25187773 - 25188292
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTATCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TGTTCCCCCACA
Flanking Amino Acid:
PGPAGGAGDRGEGGPAGPAG
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
79.4
0.66
0.9
76.6
37.2
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
48.4
-0.1
2.3
69.53
42.3

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321