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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25191694_25192864_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25191694 - 25192864
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
GGTATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATT
Flanking Amino Acid:
RGLPGISGATGNPGNDGPPG
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.2
0.48
1
65.7
44.2
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
74.6
0.85
1
82.48
32.6

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012212
25167934 - 25198254
30321