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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25192228_25192864_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25192228 - 25192864
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
GGTATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATT
Flanking Amino Acid:
NGAPGEAGRDGNPGNDGPPG
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
71.7
40.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.2
0.48
1
65.7
44.2
Minor 5ss
48
-0.2
2.9
69.1
41.8
Minor BPS
74.6
0.85
1
82.48
32.6

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021