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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25193130_25193315_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25193130 - 25193315
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TGATATACAACA
Flanking Amino Acid:
AGKPGNRGDPGPAGHVGPAG
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.3
39.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
89.3
0.88
0.8
87.9
29.4
Minor 5ss
42.5
-0.8
2.8
59.1
45.4
Minor BPS
45.9
-0.3
1.9
59.79
39.3

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021