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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25193816_25194408_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25193816 - 25194408
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTTAAAT
Flanking Amino Acid:
NGLQGLPGLAGQHGDQGPPG
Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.8
70.8
28.9
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
67.5
0.63
1.4
77.65
38.8

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021
ENSAPLT00000029507
25167934 - 25198225
30292