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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25194463_25194585_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25194463 - 25194585
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
CTGTCATTAAAC
Flanking Amino Acid:
PGNNGPAGPRGPPGPSGPPG
Intron Amino Acid Position:
926

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
40.7
-1
2.5
42.1
44.8
Minor BPS
60.4
0.31
1.8
68.86
42.3

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021