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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25194694_25195114_F

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25194694 - 25195114
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TGAAAAACTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTGAAAAACT
Flanking Amino Acid:
RGSHGSQGPAGPPGPPGPPG
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
55.5
0.12
1
49.7
43.5
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
46.2
-0.2
2.5
78.09
43.9

Associated Gene:

Gene:
COL1A2
Ensembl Gene ID:
ENSAPLG00000011169
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029507
25167934 - 25198225
30292
ENSAPLT00000024258
25161234 - 25198254
37021
ENSAPLT00000012212
25167934 - 25198254
30321
ENSAPLT00000030919
25161234 - 25198254
37021