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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25226441_25227928_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25226441 - 25227928
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
NPQVKEEGNKHGNIPFEDKS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260