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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25227974_25230149_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25227974 - 25230149
Intron Length:
2176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTGCGTTTATT
Flanking Amino Acid:
FEDKSASIKVDFLWYPEVNG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
73.9
0.59
1
81
30.2
Major PPT
82.3
0.73
0.8
77.5
36.5
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
47.8
-0
2.4
71.2
46.2

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260