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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25230213_25231523_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25230213 - 25231523
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTCTT
5'SS Class:
major
3'SS Sequence:
CTTTGTGACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTAAAACT
Flanking Amino Acid:
MRQRIKSWTEGSVAKPHIIV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.9
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.3
0.39
1
65.9
40
Minor 5ss
35.1
-1.7
3.2
50.3
46
Minor BPS
53.8
0.2
1.9
77.35
39.2

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260