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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25231569_25232262_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25231569 - 25232262
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
PHIIVAGAATWSIKIHNGSN
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.4
29.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.6
0.8
0.8
77.2
41.4
Minor 5ss
42.3
-0.8
2.9
59
45.5
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260