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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25232387_25234107_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25232387 - 25234107
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CTTTCAAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TCCTTTCAAACT
Flanking Amino Acid:
KSSDVYWVLQDPVYEDMLSE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
70.1
0.45
0.9
67.5
37
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
47.8
-0
2
67.08
44.4

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260