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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25234323_25235372_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25234323 - 25235372
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
LHLPESSRDTNAMILMNVYC
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.8
0.67
1
76.5
37
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
CASD1
Ensembl Gene ID:
ENSAPLG00000014013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014608
25215569 - 25235828
20260