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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25251844_25253765_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25251844 - 25253765
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATCTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTATATGAACT
Flanking Amino Acid:
FRMTTFQRFEVNGIPEERKL
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
83.3
0.75
0.8
76.9
35.9
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
55.9
0.26
1.7
77.46
38.1

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033215
25251527 - 25279754
28228
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000014974
25251527 - 25279754
28228