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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25251844_25254625_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25251844 - 25254625
Intron Length:
2782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTATATGAACT
Flanking Amino Acid:
QTQIPQQQSAGKWYS*
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84.4
33.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
83.3
0.75
0.8
76.9
35.9
Minor 5ss
33.8
-1.8
2.6
44.2
43
Minor BPS
55.9
0.26
1.7
77.46
38.1

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034001
25251527 - 25279754
28228