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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25256686_25257418_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25256686 - 25257418
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTTTGACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCCTTTTTGACC
Flanking Amino Acid:
GVEKRNMQTPDIQLVHHSAI
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.4
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.8
0.49
0.9
65.9
40
Minor 5ss
38.5
-1.3
3.3
49.1
41.3
Minor BPS
65.8
0.48
1.2
68.21
38.4

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000014974
25251527 - 25279754
28228