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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25257446_25258170_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25257446 - 25258170
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTATTTAATT
Flanking Amino Acid:
AYIMCCRREGVEKRNMQTPD
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
73.7
0.82
1.4
86.11
33.6

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014974
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000031788
25251527 - 25279754
28228