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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25258383_25261076_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25258383 - 25261076
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGGCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
FHIDWCKISLVDNTKQVSTF
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
63.2
0.3
1
60.5
40.3
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000014974
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000033215
25251527 - 25279754
28228