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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25261240_25262930_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25261240 - 25262930
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTCACTCATCT
Flanking Amino Acid:
VPLPINDMKEGVYVMVGADV
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
66.3
45.2
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
88.6
0.87
0.6
84.3
23.6
Minor 5ss
39.3
-1.2
2.8
42
44.3
Minor BPS
48.6
-0
2
72.24
43.7

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000014974
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000033215
25251527 - 25279754
28228