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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25263130_25264401_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25263130 - 25264401
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCATTACAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTACAA
Flanking Amino Acid:
NLIINIMSAEDFPLPYQAEF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
59.8
0.22
1
53.4
40.7
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
53.7
0.11
2
69.75
42.3

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014974
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000033215
25251527 - 25279754
28228
ENSAPLT00000031788
25251527 - 25279754
28228