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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25264475_25266743_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25264475 - 25266743
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTTACT
Flanking Amino Acid:
ENVGKPTVIEITAYNRRTFE
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
82.5
34
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
67.9
0.64
1.6
82.93
38.6

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033215
25251527 - 25279754
28228
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000014974
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228