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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25269468_25273474_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25269468 - 25273474
Intron Length:
4007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCTTTTATCT
Flanking Amino Acid:
ISRIKAVEKNVYTILSKVHS
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
60.7
0.41
1.6
76.38
40.7

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031788
25251527 - 25279754
28228
ENSAPLT00000034001
25251527 - 25279754
28228
ENSAPLT00000033215
25251527 - 25279754
28228