About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25269468_25279597_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25269468 - 25279597
Intron Length:
10130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTCGC
5'SS Class:
major
3'SS Sequence:
TTCTGCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCTTTTATCT
Flanking Amino Acid:
AGPWPALLLTVYTILSKVHS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.4
59.6
41.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
28.6
-2.5
2.9
36.1
40.7
Minor BPS
60.7
0.41
1.6
76.38
40.7

Associated Gene:

Gene:
SGCE
Ensembl Gene ID:
ENSAPLG00000014328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014974
25251527 - 25279754
28228