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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25435381_25436724_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25435381 - 25436724
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGAACAT
U12 Branch Point Sequence:
TTTTTCCCTAAG
Flanking Amino Acid:
AKKLIKDFQQKELDFIKRQE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.9
41.1
Major BPS
48.8
-0
1.2
55.1
40.4
Major PPT
78.3
0.64
0.9
83.9
24.8
Minor 5ss
41.4
-1
2.9
52.4
38.7
Minor BPS
42.9
-0.7
2.2
57.52
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017093
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021907
25435124 - 25440260
5137