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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25437105_25440217_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25437105 - 25440217
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTTTGAACC
5'SS Class:
weak_major
3'SS Sequence:
AATGGGAACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCAGCCTGTACA
Flanking Amino Acid:
VSCLDGLSQGFGRTGGLLPT
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.2
52
36.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
49.9
-0
1.1
40.1
42.2
Minor 5ss
39.8
-1.1
2.7
52.5
38
Minor BPS
49
-0
1.9
60.73
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017093
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021907
25435124 - 25440260
5137