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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2544771_2545980_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2544771 - 2545980
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
ACTCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTGGTTTTACTC
Flanking Amino Acid:
QDYHRHRYKQGIPEGVKDLP
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
73.9
0.59
1
81
30.2
Major PPT
72.9
0.52
0.8
65.4
35.5
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
49.8
-0
1.7
60.45
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045720
2542964 - 2572254
29291