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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2546139_2557877_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2546139 - 2557877
Intron Length:
11739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCCGGTG
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTAATA
Flanking Amino Acid:
HHMGVIRKRLVKSVRKNLNF
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.2
0.1
1.2
47.7
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
0.9
78.1
34.4
Minor 5ss
32
-2.1
3.8
42.8
46.7
Minor BPS
77.8
0.87
1
80.84
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030118
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045720
2542964 - 2572254
29291