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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25470734_25471777_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25470734 - 25471777
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCTCCATTT
Flanking Amino Acid:
PHGISTYIDKDDTVYLFVVN
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.5
0.73
0.9
87.3
23.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
48.8
-0
2.1
76.74
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014945
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027560
25464785 - 25479703
14919
ENSAPLT00000026925
25464785 - 25497989
33205
ENSAPLT00000020484
25466901 - 25497882
30982
ENSAPLT00000015598
25467391 - 25492545
25155
ENSAPLT00000048309
25464785 - 25495692
30908