About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25476848_25495598_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25476848 - 25495598
Intron Length:
18751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AACCTTTTATTT
Flanking Amino Acid:
MLKFLKTRRNRLNAAREI
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
48.5
-0
1.5
59.99
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014945
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048309
25464785 - 25495692
30908