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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_25476848_25497762_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25476848 - 25497762
Intron Length:
20915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AACCTTTTATTT
Flanking Amino Acid:
FSSFVPKLDARNRLNAAREI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
48.5
-0
1.5
59.99
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014945
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020484
25466901 - 25497882
30982
ENSAPLT00000026925
25464785 - 25497989
33205